No that's not how it works.
From cold the coolant circulates from the engine just to the heater.
It stays like that until the temperature reaches 90C & you have good heat from the heater.
At 90C the thermostat starts to open a parallel circulation route to the radiator.
The stat only opens a little & bleeds off just enough heat to keep the coolant temp at 90C.
So now you have 2 parallel coolant paths, one to the heater & another to the rad.
If the thermostat is working properly the coolant will stay at 90C.
These 1.9 PD engines are very efficient & you are unlikely to get the bottom hose hot unless you've been thrashing it up the motorway for a few miles.
It sounds like you may have a head gasket leaking, pushing air into the coolant giving an air lock in the heater.
Have a look in the coolant bottle from cold, see if you can see small bubbles coming to the surface, or get a combustion gas check kit & check the coolant that way.
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